Код в 2х местах главной(в чём разница, я не понял), в обоих менять?
PHP код:
<?php
                        
if( $options'header_show' ] != 'disable-both' && $options'header_show' ] == 'header-text' ) {
                        
?>
                            <h1 id="site-title">
                                <a href="<?php echo esc_urlhome_url'/' ) ); ?>" title="<?php echo esc_attrget_bloginfo'name''display' ) ); ?>" rel="home">
                                    <?php bloginfo'name' ); ?>
                                </a>
                            </h1>
                            <h2 id="site-description"><?php bloginfo'description' ); ?></h2>
                        <?php
                        
}
                        elseif( 
$options'header_show' ] != 'disable-both' && $options'header_show' ] == 'header-logo' ) {
                        
?>
                            <h1 id="site-title">
                                <a href="<?php echo esc_urlhome_url'/' ) ); ?>" title="<?php echo esc_attrget_bloginfo'name''display' ) ); ?>" rel="home">
                                    <img src="<?php echo $options'header_logo' ]; ?>" alt="<?php echo esc_attrget_bloginfo'name''display' ) ); ?>">
                                </a>
                            </h1>
                        <?php
                        
}
                        
?>